{"id":216632,"date":"2026-05-04T12:38:00","date_gmt":"2026-05-04T16:38:00","guid":{"rendered":"https:\/\/www.hajim.rochester.edu\/senior-design-day\/?p=216632"},"modified":"2026-05-04T12:38:00","modified_gmt":"2026-05-04T16:38:00","slug":"terminally-tired-topaz-thermofisher","status":"publish","type":"post","link":"https:\/\/www.hajim.rochester.edu\/senior-design-day\/terminally-tired-topaz-thermofisher\/","title":{"rendered":"Terminally Tired Topaz (Thermofisher)"},"content":{"rendered":"\n

Abstract<\/h2>\n\n\n\n

Mold growth on silicone mouthpieces of water bottles is a frequently reported issue in consumer feedback. This study investigates the effects of silicone composition and zinc oxide (ZnO) nanoparticle additives on bacterial growth using Micrococcus luteus<\/em> as a standardized model organism. Silicone coupons were fabricated from multiple commercial formulations and evaluated using a controlled \u201csandwich method,\u201d with bacterial coverage quantified via image analysis. <\/p>\n\n\n\n

Results show that baseline silicone composition significantly influences microbial adhesion, with Xiameter RBL-2004-40 exhibiting the lowest bacterial coverage. Contrary to expectations, higher ZnO concentrations increased bacterial growth, while low loading (0.1 wt%) consistently reduced coverage. This trend is attributed to nanoparticle agglomeration at higher concentrations, limiting effective antimicrobial activity.<\/p>\n\n\n\n

Introduction<\/h2>\n\n\n\n

Project Objective and Motivation<\/h3>\n\n\n\n

Developing a mold-resistant silicone for Nalgene water bottle mouthpieces to eliminate microbial biofilm growth and meet food safety standards.<\/p>\n\n\n\n

\u00a0Voice of Customer complaints surrounding competing water bottles oftentimes city mold growth and hygiene as customers\u2019 primary complaints, thus providing a motivation for exploring methods to prevent mold growth in this project.
<\/p>\n\n\n\n

The Substrate<\/h3>\n\n\n\n

The baseline material is a high-consistency silicone rubber that is hydrophobic but susceptible to mold growth on the surface. It is used by Thermo Fisher in their Nalgene Pop-top bottle mouthpieces and gaskets.
<\/p>\n\n\n\n

Bio-Film Formation Steps<\/h3>\n\n\n\n

1. Conditioning Film Formation<\/p>\n\n\n\n

Upon repeated use, salivary proteins (such as mucins, cystatin, and statherin) adhere to the silicone surface. This creates a “conditioning film” that masks the silicone’s hydrophobicity and provides a nutrient-rich anchor for microbes.<\/p>\n\n\n\n

2. Microbial Succession <\/p>\n\n\n\n

Pioneer Species such as Candida albicans (<\/em>yeast) typically colonizes the surface first, attaching to the protein layer, creating a structural scaffold. <\/p>\n\n\n\n

This scaffold allows secondary colonizers, specifically Aspergillus brasiliensis (black mold), to embed and anchor onto the silicone<\/p>\n\n\n\n

3. Biofilm Protection <\/p>\n\n\n\n

The mature colony secretes Extracellular Polymeric Substances (EPS). This sticky matrix of DNA and polysaccharides shields the mold from standard cleaning, leading to the persistent “black spots” reported in consumer products.<\/p>\n\n\n\n

<\/p>\n\n\n\n

\"\"<\/figure>\n\n\n\n

Figure 1 <\/strong>Mechanisms of Bacterial and Fungal Biofilm Development on Hydrophobic Silicone
<\/p>\n\n\n\n

Inoculation Methods<\/h2>\n\n\n\n

Pilot Phase<\/h3>\n\n\n\n

Baker’s Yeast (Saccharomyces cerevisiae)<\/em> \u2192 surrogate for Candida albicans<\/p>\n\n\n\n

Bread Mold (Rhizopus stolonifer)<\/em> \u2192 surrogate for Aspergillus brasiliensis<\/p>\n\n\n\n

    \n
  • Mouthpieces dip-coated in sucrose\/yeast nutrient solution<\/li>\n\n\n\n
  • Result: Proved biofilm formation possible; high variance observed<\/li>\n<\/ul>\n\n\n\n
    \"\"<\/figure>\n\n\n\n

    Figure 2 <\/strong>Experimental Phase Steps<\/p>\n\n\n\n

    Experimental Phase (Standardized Model)<\/h3>\n\n\n\n

    For absolute quantitative control, we transitioned to a single, controlled strain: Micrococcus luteus <\/em>(ATCC 4698). This non-pathogenic (BSL-1) strain is commonly found on human skin and in the mouth, making it a relevant representation of mouthpiece contamination.<\/p>\n\n\n\n

    \"\"<\/figure>\n\n\n\n

    Figure 3:<\/strong> Schematic for Standardized Sandwich Method
    <\/p>\n\n\n\n

    The “Sandwich Method”<\/h3>\n\n\n\n

    To improve reproducibility over liquid exposure, we implemented a face-to-colony contact method. M. luteus<\/em> was pre-grown on agar, after which silicone coupons were placed directly onto the colonies to observe the growth onto the silicone surface.<\/p>\n\n\n\n

    Testing Methods<\/h2>\n\n\n\n
    \"\"<\/figure>\n\n\n\n

    Figure 4<\/strong> \u201cBio-Box\u201d Accelerated Testing Chamber Setup<\/p>\n\n\n\n

    Accelerated Testing Chamber “Bio-Box”<\/h3>\n\n\n\n
      \n
    • Long timelines in the pilot phase motivated the development of an accelerated testing environment<\/li>\n\n\n\n
    • This environment maintained high humidity (65%) and temperatures (30\u00b0C) to mimic the environment of a water bottle with its lid closed<\/li>\n\n\n\n
    • Primary features include P\/I control, radiant heating, cool misting, and a snorkel vacuum for safety purposes<\/li>\n<\/ul>\n\n\n\n

      Silicone Fabrication Development<\/h3>\n\n\n\n
      \"\"<\/figure>\n\n\n\n

      Figure <\/strong>5 Vacuum Oven and Fabrication Schematic
      <\/p>\n\n\n\n

        \n
      • 1.5\u201d square silicone coupons of the ELASTOSIL R 401\/40S\u2122, Silastic RBL-9200-5\u2122 and Xiameter 2004-40\u2122were produced for our testing<\/li>\n\n\n\n
      • Zinc oxide was incorporated at 0.1, 1, and 5 weight percent to test the effectiveness of anti-microbial additives.<\/li>\n\n\n\n
      • Silicone mixtures were spread into uniform 3 in x 4.5 inch layers on a baking sheet to produce 6 coupons per mixture. These flat sheets were degassed in a vacuum oven and thermally cured at 120\u00b0C for 15 minutes.<\/li>\n<\/ul>\n\n\n\n

        Coverage Analysis with ImageJ<\/h3>\n\n\n\n
        \"\"<\/figure>\n\n\n\n

        Figure 6:<\/strong> ImageJ process before (left) and after (right) showing 50.24% coverage.
        <\/p>\n\n\n\n

          \n
        • ImageJ software was used to measure the percent coverage\u00a0 on the samples.<\/li>\n\n\n\n
        • Sample images are uploaded with a known distance to calibrate the scale.<\/li>\n\n\n\n
        • Regions of the sample with bacterial coverage are outlined.<\/li>\n\n\n\n
        • ImageJ calculates the area of regions of interest.<\/li>\n<\/ul>\n\n\n\n

          Results and Discussion<\/h2>\n\n\n\n
          \"\"<\/figure>\n\n\n\n

          Figure <\/strong>7 Pre- and After-wash % Bacterial Coverage of Undoped Silicone Samples
          <\/p>\n\n\n\n

          Silicone Type (one-way ANOVA)<\/h3>\n\n\n\n
            \n
          • Significant effect of material (p = 0.03)<\/em><\/li>\n\n\n\n
          • Elastosil:<\/strong> Highest percent coverage (85% unrinsed, 75% rinsed)<\/li>\n\n\n\n
          • Silastic 9200: Variable coverage similar to Elastosil baseline. (80% unrinsed, 70% rinsed)<\/li>\n\n\n\n
          • Xiameter 2004: Lowest and most consistent percent coverage. (58% unrinsed, 49% rinsed)<\/li>\n<\/ul>\n\n\n\n

            Effect of ZnO (two-way ANOVA)<\/h3>\n\n\n\n
            \"\"<\/figure>\n\n\n\n

            Figure 8 <\/strong>\u00a0Baseline Silicone with 0%, 0.1%, 1%, and 5% wt. ZnO
            <\/p>\n\n\n\n

            \"\"<\/figure>\n\n\n\n

            Figure 9 <\/strong>Elastosil\u2122 % Coverage by Varying % wt. ZnO
            <\/p>\n\n\n\n

              \n
            • ZnO significantly reduces percent coverage (p = 0.042<\/em>).<\/li>\n\n\n\n
            • Effect is beneficial overall but not uniform in magnitude.<\/li>\n<\/ul>\n\n\n\n

              Primary Considerations<\/h3>\n\n\n\n

              Across all materials, rinsing lowered the percent coverage but also added statistical variation that needs to be further explored. For the unmodified silicones, Elastosil and Silastic 9200 showed relatively high coverage, while Xiameter 2004 demonstrated the best mold resistance due to the lowest coverage of M. Luteus.<\/em><\/p>\n\n\n\n

                \n
              • With ZnO additives, 0.1 % wt. showed the best performance, but increasing concentrations beyond that negatively impacted the mold resistance.<\/li>\n<\/ul>\n\n\n\n

                Future Work<\/h2>\n\n\n\n

                Our preliminary data suggest a relationship between increased surface roughness and greater mold growth, indicating surface topography may play a meaningful role in microbial adhesion<\/p>\n\n\n\n

                  \n
                • In particular, the rougher samples exhibit pronounced valleys and micro-scale features that can:\n
                    \n
                  • Promote liquid pooling<\/li>\n\n\n\n
                  • Reduce exposure to shear forces<\/li>\n\n\n\n
                  • Provide protected sites for spore attachment, growth<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n\n\n\n

                    Future work should focus on engineering uniform surface structures that mitigate these effects. Approach:<\/p>\n\n\n\n

                      \n
                    • Controlled nanotexturing to shift the surface toward a Cassie-Baxter wetting regime<\/li>\n\n\n\n
                    • Use of a silicon wafer with nanotexture as a \u201csoft lithography\u201d methodology<\/li>\n\n\n\n
                    • AFM and EDAX for better understanding of surface roughness and distribution<\/li>\n<\/ul>\n\n\n\n
                      \"\"<\/figure>\n\n\n\n

                      Figure 10:<\/strong> 2.5 wt% ZnO Profilometery
                      <\/p>\n\n\n\n

                      Acknowledgments<\/h2>\n\n\n\n

                      We would like to thank: <\/p>\n\n\n\n

                      Mr. Henry Davignon, Thermo Fisher Scientific<\/p>\n\n\n\n

                      Dr. Martin Pavelka, Department of Microbiology and Immunology, UR Medicine<\/p>\n\n\n\n

                      Dr. Sonia Rosenberger, Environmental Health and Safety<\/p>\n\n\n\n

                      Prof. Gang Fan, University of Rochester Department of Chemical Engineering<\/p>\n\n\n\n

                      Tarek Rafeedi, Dominic Lippa, and Elena Perez<\/p>\n\n\n\n

                      Prof. Doug Kelley, Prof. Mark Juba, Prof. Wayne Griffin, Lena Lederman, Dominic Lippa, Clair Cunningham, Mason Garlatti, and Elena Perez<\/p>\n\n\n\n

                      Wacker Chemie, RD Abbott, and Dow Chemical<\/p>\n\n\n\n

                      and our advisors, Prof. Melodie Lawton and Lena Lederman<\/p>\n\n\n\n

                      <\/p>\n","protected":false},"excerpt":{"rendered":"

                      Abstract Mold growth on silicone mouthpieces of water bottles is a frequently reported issue in consumer feedback. This study investigates the effects of silicone composition and zinc oxide (ZnO) nanoparticle…<\/p>\n","protected":false},"author":20152,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"categories":[4452,4482],"tags":[],"coauthors":[25212,25222,25232],"class_list":["post-216632","post","type-post","status-publish","format-standard","hentry","category-current-year","category-che"],"acf":[],"yoast_head":"\nTerminally Tired Topaz (Thermofisher) - Senior Design Day<\/title>\n<meta name=\"description\" content=\"Mold growth on silicone mouthpieces of water bottles is a frequently reported issue in consumer feedback. 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