{"id":68522,"date":"2022-03-01T15:22:54","date_gmt":"2022-03-01T19:22:54","guid":{"rendered":"https:\/\/seniordesign.digitalscholar.rochester.edu\/spring2022\/uncategorized\/junglecup-surveillance\/"},"modified":"2022-09-12T09:55:47","modified_gmt":"2022-09-12T13:55:47","slug":"junglecup-surveillance","status":"publish","type":"post","link":"https:\/\/www.hajim.rochester.edu\/senior-design-day\/junglecup-surveillance\/","title":{"rendered":"JungleCup Surveillance"},"content":{"rendered":"\n<h1 class=\"has-custom-font wp-block-heading\" style=\"font-family:Times New Roman\">Dengue Virus Detection in Mosquitoes in Costa Rica<\/h1>\n\n\n\n<h2 class=\"has-custom-font wp-block-heading\" style=\"font-family:Times New Roman\">Authors<\/h2>\n\n\n\n<figure class=\"wp-block-image size-large is-resized\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/03\/headshots-1024x202.png\" alt=\"\" class=\"wp-image-81702\" width=\"706\" height=\"139\" srcset=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/03\/headshots-1024x202.png 1024w, https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/03\/headshots-300x59.png 300w, https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/03\/headshots-768x151.png 768w, https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/03\/headshots-1200x236.png 1200w, https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/03\/headshots.png 1255w\" sizes=\"auto, (max-width: 706px) 100vw, 706px\" \/><\/figure>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Ava Giorgianni<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Jacob Kelley<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Tiana Salomon<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Kaelyn Schloss<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Caroline Stockwell<\/p>\n\n\n\n<h2 class=\"has-custom-font wp-block-heading\" style=\"font-family:Times New Roman\">Mentor<\/h2>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. Edward Brown<\/p>\n\n\n\n<h2 class=\"has-custom-font wp-block-heading\" style=\"font-family:Times New Roman\">Customers<\/h2>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. Timothy Dye<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. Adriana Troyo Rodriguez<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Georgia\">Dr. Benjamin Miller<\/p>\n\n\n\n<h2 class=\"has-custom-font wp-block-heading\" style=\"font-family:Times New Roman\">Problem Statement<\/h2>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">The JungleCup is a small, portable, and weather-proof device that can operate in various Costa Rican environments. This device attracts, traps, and kills female mosquitoes so that the number of mosquitoes carrying dengue virus can be evaluated to support health-related environmental research efforts.<\/p>\n\n\n\n<h2 class=\"has-custom-font wp-block-heading\" style=\"font-style:normal;font-weight:700;font-family:Times New Roman\"><strong>The Device<\/strong><\/h2>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">The JungleCup is a one compartment device made from inexpensive, readily available materials. As shown in Figure 1, the device is made from an upside down, screw top Ziploc plastic container. The lactic-acid-soaked membrane, which is used to attract mosquitoes into the device and entice them to bite, rests on a petri dish inside the lid of the container. Sections of plastic on the walls of the device have been removed and replaced with mesh patches to allow for ventilation and detection of the lactic acid by mosquitoes outside of the cup. Mosquitoes are able to enter through the funnels that have been inserted into the mesh. This style of entry point has been used successfully in other bug traps to make entry easier and exiting more difficult. The black rain hoods cover the mesh portions of the cup to prevent rainfall from getting into the device, and the pink strings make it possible to hang the device at the desired length. <\/p>\n\n\n\n<div class=\"wp-block-image\"><figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"609\" height=\"339\" src=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-184.png\" alt=\"\" class=\"wp-image-102612\" srcset=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-184.png 609w, https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-184-300x167.png 300w\" sizes=\"auto, (max-width: 609px) 100vw, 609px\" \/><\/figure><\/div>\n\n\n\n<p class=\"has-text-align-center has-custom-font\" style=\"font-family:Times New Roman\"><strong>Figure 1<\/strong>: The JungleCup<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Our customer plans to deploy around 20 of these devices near their laboratory in Costa Rica. In the field, each device will contain a pesticide strip to kill the mosquitoes that enter after about 5 minutes of exposure. The devices will be visited every 24-48 hours and the membranes in their petri dishes will be collected and replaced. The mosquito-bitten membranes will be taken back to the lab, where the lab members will conduct a colorimetric dot blot assay to analyze the membrane for the presence of dengue positive mosquito saliva.<\/p>\n\n\n\n<h2 class=\"has-larger-font-size has-custom-font wp-block-heading\" style=\"font-style:normal;font-weight:700;font-family:Times New Roman\"><strong>The Analysis<\/strong><\/h2>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">After the membrane is brought back to the laboratory, colorimetric dot-blot assay will be performed. The assay used by the customer to detect dengue virus in the infected mosquitoes will use a biotinylated antibody specific for a dengue protein, non-structural protein 1 (NS1), to detect the viral protein. This detection will use a colorimetric readout by adding streptavidin HRP and a colorimetric TMB substrate. This reaction will result in blue dots on the membrane where the protein of interest was detected. In order to model the assay that the customer will use, ovalbumin was used as a model antigen to detect, as we were not able to work with dengue virus in the lab, and ovalbumin has a similar molecular weight to dengue NS1. The prototype we developed included spotting ovalbumin solution onto a PVDF membrane, blocking the membrane with BSA to take up the rest of the binding sites, washing the membrane then incubating it with a biotinylated anti-ovalbumin polyclonal antibody. Then, the membrane was washed again and steptavidin HRP was added and washed again. Finally, the TMB substrate was added to produce the colorimetric reaction. <\/p>\n\n\n\n<div class=\"wp-block-image\"><figure class=\"aligncenter size-full is-resized\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-181.png\" alt=\"\" class=\"wp-image-102572\" width=\"251\" height=\"457\" srcset=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-181.png 334w, https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-181-165x300.png 165w\" sizes=\"auto, (max-width: 251px) 100vw, 251px\" \/><\/figure><\/div>\n\n\n\n<p class=\"has-text-align-center has-custom-font\" style=\"font-family:Times New Roman\"><strong>Figure 2<\/strong>:<strong> <\/strong>Colorimetric dot-blot assay results using ovalbumin<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">After performing the dot-blot assay, the images will be analyzed by a MATLAB Graphical User Interface (GUI) to quickly and efficiently quantify the number of dengue-positive dots.<\/p>\n\n\n\n<div class=\"wp-block-image\"><figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"545\" height=\"358\" src=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-180.png\" alt=\"\" class=\"wp-image-102542\" srcset=\"https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-180.png 545w, https:\/\/www.hajim.rochester.edu\/senior-design-day\/wp-content\/uploads\/2022\/04\/image-180-300x197.png 300w\" sizes=\"auto, (max-width: 545px) 100vw, 545px\" \/><\/figure><\/div>\n\n\n\n<p class=\"has-text-align-center has-custom-font\" style=\"font-family:Times New Roman\"><strong>Figure 3<\/strong>:<strong> <\/strong>Result of MATLAB GUI<\/p>\n\n\n\n<h2 class=\"has-custom-font wp-block-heading\" style=\"font-family:Times New Roman\">Future Directions<\/h2>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Currently there is a gap in knowledge where we were unable to test whether the mosquitoes will land on, and bite or probe the membrane thus leaving behind saliva and possibly dengue virus. This will need to be tested. Further, optimization of the colorimetric dot-blot assay will need to occur, and possibly a comparison to qPCR (the most sensitive detection method) to determine specificity of the assay as well. Finally, investigation into more sustainable and environmentally-friendly cup materials should be established. <\/p>\n\n\n\n<h2 class=\"has-custom-font wp-block-heading\" style=\"font-family:Times New Roman\">Acknowledgements<\/h2>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\"><strong>TA<\/strong>: Allison Coon<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\"><strong>Professors<\/strong>: Dr. Amy Lerner &amp; Dr. Scott Seidman<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\"><strong>Special thanks to<\/strong>: <\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. Saravanan Thangamani (Upstate Medical University) for assisting us with mosquito testing of our device<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. James McGrath (University of Rochester) for providing guidance on the detection method<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. James Fry (University of Rochester) for assisting us with drosophila testing of our device<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. Michel Bryan (University of Rochester) for providing us insight on how to alter our detection method<\/p>\n\n\n\n<p class=\"has-custom-font\" style=\"font-family:Times New Roman\">Dr. Kanika Vats (University of Rochester) for providing us with ovalbumin<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The JungleCup is a small, portable, and weather-proof device that can operate in various Costa Rican environments that attracts and traps mosquitoes to determine the prevalence of dengue virus.<\/p>\n","protected":false},"author":6242,"featured_media":74792,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"categories":[56],"tags":[],"coauthors":[8612],"class_list":["post-68522","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-bme-archive"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.5 - 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