Graduate Programs

Term Schedule

Fall 2020

Number	Title	Instructor	Time
BME 402-1 Research Methods Danielle Benoit F 11:30AM - 12:30PM
PreparesPh.D.studentstocarryoutindependentresearch.Researchtools,laboratoryskills,experimentalmethods,criticalthinking,presentations,andcareerplanningarediscussedasarefacilitiesandresourcesatUR/URMC. Location Goergen Hall Room 109 (F 11:30AM - 12:30PM)
BME 406-1 Sigs, Noise & Matrix Methods Stephen McAleavey TR 9:40AM - 10:55AM
An overview of the theory and practice (with Matlab) of signal processing and analysis with applications to problems in biomedicine. Topics include continuous and discrete time linear systems, Fourier Series and Transforms (1D and 2D), spectral analysis, FIR and IIR digital filters, time-frequency analysis, principle components analysis, Bayes probability, random processes, optimal filters, and fundamentals of digital image processing. Examples drawn from medical applications. Location Meliora Room 218 (TR 9:40AM - 10:55AM)
BME 406-2 Technical Computing in BME Stephen McAleavey TR 9:40AM - 10:55AM
Course Description: An introduction to the use of Matlab and associated tools for solving practical problems arising in biomedical engineering and related fields. Topics include: review of Matlab fundamentals; design and implementation of FIR and IIR digital filters; spectral and time-frequency analysis of signals; image processing and enhancement; statistical calculations; optimization and curve fitting; numerical solution of ordinary differential equations; symbolic math operations; applied linear algebra. Final Project. Prerequisite: enrolled as a graduate student Location Online Room 4 (ASE) (TR 9:40AM - 10:55AM)
BME 410-1 Introduction to Augmented and Virtual Reality Mujdat Cetin MW 2:00PM - 3:15PM
This course provides a broad introduction to augmented and virtual reality (AR/VR) systems. The course involves lectures covering an overview of all aspects of the AR/VR domain, as well as individual work performed by each student aimed at providing more intensive training on various aspects of AR/VR. Topics covered in the lectures include history, conceptual origins, and design/evaluation principles of AR/VR technologies; overview of visual/auditory/haptic AR/VR interfaces and applications; visual perception; optics/platforms/sensors/displays; auditory perception and spatial audio; silicon hardware architecture and materials; graphics and computation; interfaces and user experience design; data processing and machine intelligence for AR/VR; introduction to AR/VR programming tools; societal implications and ethical aspects. At the end of the course, students will have gained familiarity with the techniques, languages, and cultures of fields integral to the convergent research theme of AR/VR. This course is co-instructed by Mujdat Cetin, Michele Rucci, Ross Maddox, Jannick Rolland, Yuhao Zhu, Andrew White, Chenliang Xu, and Zhen Bai. Location Online Room 22 (ASE) (MW 2:00PM - 3:15PM)
BME 411-1 Cellular&Molecular Bio Found Ian Dickerson MWF 9:00AM - 9:50AM
Molecular biology, biochemistry, and genetics that are required to understand the biomedical and broader biological issues that affect our lives. Prerequisite: BIOL110. Location Goergen Hall Room 108 (MWF 9:00AM - 9:50AM)
BME 411-2 Cellular&Molecular - Rec Ian Dickerson F 10:25AM - 11:15AM
Molecular biology, biochemistry, and genetics that are required to understand the biomedical and broader biological issues that affect our lives. Location Goergen Hall Room 109 (F 10:25AM - 11:15AM)
BME 418-1 Intro to Neuroengineering Laurel Carney TR 2:00PM - 3:15PM
Quantitative studies of neural responses at the cellular, circuit, and systems levels. Analytical and computational modeling of neurons and systems, including nonlinear behavior of neurons and neural circuits. Neural coding of information by single cells or neural populations. Introduction to neural networks. Techniques for recording neural activity. Location Hutchison Hall Room 140 (TR 2:00PM - 3:15PM)
BME 418-2 Intro to Neuroengineer - Lab Laurel Carney F 3:25PM - 4:40PM
Quantitative studies of neural responses at the cellular, circuit, and systems levels. Analytical and computational modeling of neurons and systems, including nonlinear behavior of neurons and neural circuits. Neural coding of information by single cells or neural populations. Introduction to neural networks. Techniques for recording neural activity. Location Online Room 12 (ASE) (F 3:25PM - 4:40PM)
BME 420-1 Biomedical Nanotech Kanika Vats TR 2:00PM - 3:15PM
This course is designed to provide students with detailed knowledge of the principles of nanotechnology and their applications in the biomedical field. Topics of study will include synthesis & assembly of nanoscale structures, lithography, and nanobiomaterials. Students will focus on biomedically-relevant topics such as cancer treatment, bone disorder, diabetes; and learn how nanotechnology is helping diagnose, treat, and understand these medical disorders. Recent innovative research in the biomedical field will be highlighted during discussions of the latest journal articles. At the end of the course, students will have an appreciation of the enormous potential of biomedical nanotechnology, its current, and future applications Location Hylan Building Room 102 (TR 2:00PM - 3:15PM)
BME 420-2 Biomedical Nanotechnology Kanika Vats TR 2:00PM - 3:15PM
This course is designed to provide students with detailed knowledge of principles and applications of nanotechnology in the biomedical field. Topics of study include synthesis & assembly of nanoscale structures, lithography, nanobiomaterials and nano-biomechanics along with the applications of nanotechnology in biomedical engineering. Recent innovative research in the field will be highlighted in lectures by discussing and critically analyzing recently published journal articles. Ultimately, students will have an appreciation of the enormous potential of biomedical nanotechnology, its current and potential applications. Prerequisites: MSC 202, CHEM 131,132, BME 245 Location (TR 2:00PM - 3:15PM)
BME 428-1 Physiological Control Systms Kevin Davis TR 12:30PM - 1:45PM
This course introduces students to the theory and practice of control systems engineering. Topics include frequency domain modeling, time domain stability, transient and steady-state error analysis, root locus and frequency response techniques and feedback system design. Emphasis is placed on analyzing physiological control systems, but the concepts and design techniques are applicable and applied to a wide variety of other systems including mechanical and electrical systems. Prerequisites: juniors with MATH164, MATH 165 and BME 230 or ECE 241 (can be concurrent). Location Wegmans Room 1400 (TR 12:30PM - 1:45PM)
BME 429-1 Applied Nanoscience and Nano-engineering Kanika Vats TR 2:00PM - 3:15PM
Description This course will educate students how engineering at the nanoscale is different from macro-level, how/why it offers novel properties which can be harnessed and applied to multiple research fields. Course content will include topics such as, nanoparticles, nanotubes, nanowires- their synthesis, applications, and properties; nanofabrication: both top-down and bottom-up approaches, nano-electronics, nanophotonics, and nano-pumps. Additionally, the workings of many spectroscopic and microscopic techniques specifically developed to analyze and manipulate nanomaterials will be discussed in detail. Prerequisites: Chemistry-I (CHM 131), Chemistry-II (CHM132), Physics-I Mechanics (PHYS 121)Biology (BIO-110), Physics-II Electricity and Magnetism (PHYS 122) or permission of instructor Course dates: 8/26/2020-10/16/2020 Location Meliora Room 203 (TR 2:00PM - 3:15PM)
BME 431-1 FDA & Intellectual Property Joan Adamo M 3:40PM - 4:55PM
This interactive course will offer students exposure to intellectual property (IP), patenting processes and regulatory pathways for new medical innovations. Students will learn the terminology, processes and challenges involved in FDA regulations, and the protection and evaluation of intellectual property for medical innovations. Differences between Regulatory Affairs and Regulatory Science will be highlighted with opportunities to work on Regulatory Science in a project setting. An emphasis will be placed on ways that knowledge of prior art and regulatory barriers can optimize concept selection, and early phase project planning to best identify projects suitable for commercialization. Location Goergen Hall Room 109 (M 3:40PM - 4:55PM)
BME 452-1 Med Imaging-Theory&Implemt Kevin Parker MW 3:25PM - 4:40PM
Physics and implementation of X-ray, ultrasonic, and MR imaging systems. Special attention is given to the Fourier transform relations and reconstruction algorithms of X-ray and ultrasonic-computed tomography, and MRI. Prerequisite: ECE 242. Location Computer Studies Room 601 (MW 3:25PM - 4:40PM)
BME 453-1 Ultrasound Imaging Stephen McAleavey TR 12:30PM - 1:45PM
This course investigates the imaging techniques applied in state-of-the-art ultrasound imaging and their theoretical bases. Topics include linear acoustic systems, spatial impulse responses, the k-space formulation, methods of acoustic field calculation, dynamic focusing and apodization, scattering, the statistics of acoustic speckle, speckle correlation, compounding techniques, phase aberration correction, velocity estimation, and flow imaging. A strong emphasis is placed on readings of original sources and student assignments and projects based on realistic acoustic simulations. Prerequisites: BME 230 or ECE 241. Location Goergen Hall Room 109 (TR 12:30PM - 1:45PM)
BME 455-1 Translational Biomedical Opt Regine Choe MW 12:30PM - 1:45PM
This course provides considerations in designing optical instrument suitable for clinical translation, theory behind the light propagation in biological tissues, and data analysis and interpretation skills. In particular, fundamental theory behind the diffuse optical spectroscopy and tomography, diffuse correlation spectroscopy and photoacoustic tomography will be covered. Pre-requisites: BME221, BME270, OPT241, OPT261 Location Online Room 1 (ASE) (MW 12:30PM - 1:45PM)
BME 460-1 Quantitative Physiology Scott Seidman TR 3:25PM - 4:40PM
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems. Prerequisite: ECE113 or BME210 or permission of instructor. Location Hutchison Hall Room 141 (TR 3:25PM - 4:40PM)
BME 460-2 Quantitative Physiology-Lab Scott Seidman W 3:25PM - 6:25PM
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems Location Goergen Hall Room 104 (W 3:25PM - 6:25PM)
BME 460-3 Quantitative Physiology-Lab Scott Seidman F 2:00PM - 5:00PM
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems Location Goergen Hall Room 104 (F 2:00PM - 5:00PM)
BME 460-4 Quantitative Physiology-Lab Scott Seidman W 9:00AM - 12:00PM
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems Location Goergen Hall Room 104 (W 9:00AM - 12:00PM)
BME 460-5 Quantitative Physiology-Lab Scott Seidman F 10:00AM - 1:00PM
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems Location Goergen Hall Room 104 (F 10:00AM - 1:00PM)
BME 465-1 Introcell Mech & Mechbio Whasil Lee TR 9:40AM - 10:55AM
This course will examine the mechanical properties of cells and the mechanotransduction processes of clinical and technological importance. Topics covered include the role of mechanotransducing biomolecules, models of cell mechanics, and the methods to measure mechanical properties of cells. This course will also introduce students to effects of internal / external mechanical stimuli on cellular processes which may lead to various human diseases. Students will learn basic terminology and concepts of mechanics at the molecular and cellular level with an emphasis on quantitative analysis, modeling, and applications to clinical medicine. Two additional laboratory modules will provide hands-on experience to measure cellular mechanical properties and mechanotransduction signaling using FRET-based force sensors and Calcium dye. Prerequisites/Corequisites: BME211 or 257 or 411, BME260, IND431 or Permission of Instructor. Limited to Juniors and Seniors ONLY. Location Hutchison Hall Room 473 (TR 9:40AM - 10:55AM)
BME 466-1 Bioprocess Engineering Jason Condon WF 11:50AM - 1:05PM
This course will explore the bioprocesses involved in producing a biopharmaceutical product (therapeutic proteins, cell therapy products, and vaccines). The course will take a stepwise journey through a typical production process from the perspective of a Bioprocess Engineer, starting with cell culture and moving downstream through purification and final fill. Engineering concepts involved in bioreactor design and control, cell removal/recovery operations, and protein purification will be examined. The course will also provide an introduction to the analytical methods used to test biopharmaceutical products for critical quality attributes The role of the regulatory agencies, like the US Food and Drug Administration, and the regulations that govern the industry will be introduced throughout the course in the context of the bioprocess to which they relate. Graduate students will need to complete a semester-end project in order to receive graduate credit for the course. Pre-requisites: BIO110, CHM132, CHE243 or ME225, CHE244 or Permission of Instructor Location Online Room 22 (ASE) (WF 11:50AM - 1:05PM)
BME 483-1 Biosolid Mechanics Mark Buckley TR 11:05AM - 12:20PM
In this course, we will survey the role of mechanics in cells, tissues, organs and organisms. A particular emphasis will be placed on the mechanics of the musculoskeletal system, the circulatory system and the eye. Engineering concepts will be used to understand how physical forces contribute to biological processes, especially disease and healing. Experimental and modeling techniques for characterizing the complex mechanical response of biosolids will be discussed in detail, and the continuum mechanics approach will highlighted.Prerequisites: ME226, BME 201, and 201P or ME 120. Location Goergen Hall Room 101 (TR 11:05AM - 12:20PM)
BME 486-1 Finite Elements Methods Hesamaldin Askari MW 10:25AM - 11:40AM
This course provides a thorough grounding on the theory and application of linear finite element analysis in solid and structural mechanics and related disciplines. Topics: matrix structural analysis concepts and computational procedures, review of linear elasticity, variational methods and energy formulation, weighted residual methods and Galerkin techniques, shape functions based on assumed displacements, isoparametric formulation, FE solution of heat transfer problems, global analysis aspects, error estimation and convergence. MATLAB is used extensively througout the course Location Online Room 14 (ASE) (MW 10:25AM - 11:40AM)
BME 491-1 Master's Reading in BME – –
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BME 492-1 Neuroenhancement&Rehab Eng Edmund Lalor MW 10:25AM - 11:40AM
Introduction to topics and devices in the field of neuroengineering. The course will cover approaches to understanding, repairing, replacing, enhancing, and exploiting the properties of neural systems and will include a focus on scientific research directed at the interface between living neural systems and non-living components. Prerequisites: BME 210, BME 201P, BME 230, BME 218. Open to undergraduates with permission of instructor. Location (MW 10:25AM - 11:40AM)
BME 493-1 Master's Essay – –
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BME 495-01 Master's Research in BME Greg Gdowski –
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BME 495-02 Master's Research in BME Amy Lerner –
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BME 495-03 Master's Research in BME Hani Awad –
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BME 495-04 Master's Research in BME Scott Seidman –
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BME 495-05 Master's Research in BME Stephen McAleavey –
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BME 495-06 Master's Research in BME Lisa DeLouise –
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BME 495-07 Master's Research in BME James McGrath –
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BME 495-08 Master's Research in BME Mark Buckley –
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BME 495-09 Master's Research in BME Anne Luebke –
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BME 495-1 Master's Research in BME – –
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BME 495-10 Master's Research in BME Geunyoung Yoon –
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BME 495-11 Master's Research in BME Benjamin Miller –
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BME 495-12 Master's Research in BME Ross Maddox –
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BME 495-13 Master's Research in BME Manuel Gomez-Ramirez –
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BME 495-14 Master's Research in BME Maiken Nedergaard –
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BME 495-15 Master's Research in BME Edmund Lalor –
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BME 495-2 Master's Research in BME Hani Awad –
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BME 495-XX Master's Research in BME Hani Awad –
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BME 496-1 Current Research Seminars Diane Dalecki TR 8:30AM - 9:30AM
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BME 535-1 Med Device Design Greg Gdowski F 11:25AM - 2:45PM
This course builds on clinical observations and guides the process of selection of an unmet clinical need for further design and development. Teams will refine observed needs, then use brainstorming and prototyping techniques to develop potential concepts. Six Sigma tools will be used to guide design decisions and clarify design requirements. Both oral and written communication skills will be developed. Location Goergen Hall Room 108 (F 11:25AM - 2:45PM)
BME 535-BME 5 Sp Topic: Med Device Design – –
This course builds on clinical observations and guides the process of selection of an unmet clinical need for further design and development. Teams will refine observed needs, then use brainstorming and prototyping techniques to develop potential concepts. Six Sigma tools will be used to guide design decisions and clarify design requirements. Both oral and written communication skills will be developed.
BME 535-Fall Sp Topic: Med Device Design – –
This course builds on clinical observations and guides the process of selection of an unmet clinical need for further design and development. Teams will refine observed needs, then use brainstorming and prototyping techniques to develop potential concepts. Six Sigma tools will be used to guide design decisions and clarify design requirements. Both oral and written communication skills will be developed.
BME 535-Fall Sp Topic: Med Device Design – –
This course builds on clinical observations and guides the process of selection of an unmet clinical need for further design and development. Teams will refine observed needs, then use brainstorming and prototyping techniques to develop potential concepts. Six Sigma tools will be used to guide design decisions and clarify design requirements. Both oral and written communication skills will be developed.
BME 591-1 PhD Readings in BME – –
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BME 593-1 Laboratory Rotations in BME Diane Dalecki –
Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
BME 595-01 PhD Research Hani Awad –
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BME 595-02 PhD Research Danielle Benoit –
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BME 595-03 PhD Research Andrew Berger –
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BME 595-04 PhD Research Edward Brown –
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BME 595-05 PhD Research Benjamin Miller –
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BME 595-06 PhD Research Mark Buckley –
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BME 595-07 PhD Research Laurel Carney –
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BME 595-08 PhD Research Regine Choe –
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BME 595-09 PhD Research Diane Dalecki –
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BME 595-1 PhD Research – –
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BME 595-10 PhD Research Michael Giacomelli –
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BME 595-11 PhD Research Catherine Kuo –
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BME 595-12 PhD Research Edmund Lalor –
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BME 595-13 PhD Research Whasil Lee –
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BME 595-14 PhD Research Anne Luebke –
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BME 595-15 PhD Research Ross Maddox –
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BME 595-16 PhD Research Stephen McAleavey –
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BME 595-17 PhD Research James McGrath –
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BME 595-18 PhD Research Jong-Hoon Nam –
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BME 595-19 PhD Research Richard Waugh –
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BME 595-20 PhD Research Benjamin Crane –
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BME 595-21 PhD Research Lisa DeLouise –
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BME 595-22 PhD Research Kenneth Henry –
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BME 595-23 PhD Research Denise Hocking –
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BME 595-24 PhD Research Jennifer Hunter –
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BME 595-25 PhD Research Alayna Loiselle –
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BME 595-26 PhD Research Marc Schieber –
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BME 595-27 PhD Research Edward Schwarz –
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BME 595-28 PhD Research David Williams –
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BME 595-29 PhD Research Jesse Schallek –
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BME 595-30 PhD Research Geunyoung Yoon –
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BME 595-31 PhD Research Joe Chakkalakal –
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BME 595-32 PhD Research Minsoo Kim –
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BME 595-33 PhD Research Maiken Nedergaard –
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BME 595-34 PhD Research Eric Small –
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BME 595-35 PhD Research Edward Freedman –
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BME 595-36 PhD Research Jianhui Zhong –
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BME 595-37 PhD Research Angela Glading –
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BME 595-XX PhD Research Mark Buckley –
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BME 895-1 Cont of Master's Enrollment – –
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BME 897-01 Master's Dissertation Greg Gdowski –
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BME 897-02 Master's Dissertation Amy Lerner –
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BME 897-03 Master's Dissertation Ross Maddox –
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BME 897-04 Master's Dissertation James McGrath –
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BME 897-05 Master's Dissertation Hani Awad –
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BME 897-06 Master's Dissertation Scott Seidman –
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BME 897-07 Master's Dissertation Lisa DeLouise –
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BME 897-08 Master's Dissertation Mark Buckley –
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BME 897-09 Master's Dissertation Benjamin Miller –
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BME 899-01 Master's Dissertation Hani Awad –
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BME 899-02 Master's Dissertation Greg Gdowski –
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BME 899-03 Master's Dissertation Amy Lerner –
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BME 899-04 Master's Dissertation Scott Seidman –
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BME 899-05 Master's Dissertation Ross Maddox –
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BME 899-06 Master's Dissertation James McGrath –
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BME 899-07 Master's Dissertation Lisa DeLouise –
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BME 899-08 Master's Dissertation Stephen McAleavey –
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BME 899-09 Master's Dissertation Mark Buckley –
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BME 899-1 Master's Dissertation Hani Awad –
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BME 899-10 Master's Dissertation Benjamin Miller –
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BME 985-1 Leave of Absence – –
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BME 995-1 Cont of Doctoral Enrollment – –
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BME 997-01 Doctoral Dissertation Hani Awad –
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BME 997-02 Doctoral Dissertation Danielle Benoit –
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BME 997-03 Doctoral Dissertation Andrew Berger –
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BME 997-04 Doctoral Dissertation Edward Brown –
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BME 997-05 Doctoral Dissertation Mark Buckley –
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BME 997-06 Doctoral Dissertation Laurel Carney –
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BME 997-07 Doctoral Dissertation Regine Choe –
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BME 997-08 Doctoral Dissertation Diane Dalecki –
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BME 997-09 Doctoral Dissertation Michael Giacomelli –
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BME 997-10 Doctoral Dissertation Anne Luebke –
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BME 997-11 Doctoral Dissertation Edmund Lalor –
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BME 997-12 Doctoral Dissertation Catherine Kuo –
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BME 997-13 Doctoral Dissertation Whasil Lee –
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BME 997-14 Doctoral Dissertation Ross Maddox –
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BME 997-15 Doctoral Dissertation Stephen McAleavey –
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BME 997-16 Doctoral Dissertation James McGrath –
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BME 997-17 Doctoral Dissertation Jong-Hoon Nam –
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BME 997-18 Doctoral Dissertation Lisa DeLouise –
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BME 997-19 Doctoral Dissertation Kenneth Henry –
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BME 997-20 Doctoral Dissertation Denise Hocking –
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BME 997-21 Doctoral Dissertation Edward Schwarz –
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BME 997-22 Doctoral Dissertation Jesse Schallek –
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BME 997-23 Doctoral Dissertation Geunyoung Yoon –
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BME 997-24 Doctoral Dissertation Minsoo Kim –
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BME 997-25 Doctoral Dissertation Benjamin Miller –
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BME 997-26 Doctoral Dissertation Eric Small –
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BME 997-XX Doctoral Dissertation – –
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BME 999-01 Doctoral Dissertation Hani Awad –
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BME 999-02 Doctoral Dissertation Danielle Benoit –
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BME 999-03 Doctoral Dissertation Andrew Berger –
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BME 999-04 Doctoral Dissertation Edward Brown –
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BME 999-05 Doctoral Dissertation Mark Buckley –
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BME 999-06 Doctoral Dissertation Laurel Carney –
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BME 999-07 Doctoral Dissertation Regine Choe –
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BME 999-08 Doctoral Dissertation Diane Dalecki –
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BME 999-09 Doctoral Dissertation Michael Giacomelli –
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BME 999-10 Doctoral Dissertation Anne Luebke –
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BME 999-11 Doctoral Dissertation Edmund Lalor –
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BME 999-12 Doctoral Dissertation Catherine Kuo –
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BME 999-13 Doctoral Dissertation Whasil Lee –
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BME 999-14 Doctoral Dissertation Ross Maddox –
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BME 999-15 Doctoral Dissertation Stephen McAleavey –
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BME 999-16 Doctoral Dissertation James McGrath –
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BME 999-17 Doctoral Dissertation Jong-Hoon Nam –
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BME 999-18 Doctoral Dissertation Richard Waugh –
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BME 999-19 Doctoral Dissertation Benjamin Crane –
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BME 999-20 Doctoral Dissertation Lisa DeLouise –
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BME 999-21 Doctoral Dissertation Kenneth Henry –
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BME 999-22 Doctoral Dissertation Denise Hocking –
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BME 999-23 Doctoral Dissertation Jennifer Hunter –
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BME 999-24 Doctoral Dissertation Alayna Loiselle –
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BME 999-25 Doctoral Dissertation Marc Schieber –
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BME 999-26 Doctoral Dissertation Edward Schwarz –
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BME 999-27 Doctoral Dissertation David Williams –
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BME 999-28 Doctoral Dissertation Jesse Schallek –
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BME 999-29 Doctoral Dissertation Geunyoung Yoon –
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BME 999-30 Doctoral Dissertation Joe Chakkalakal –
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BME 999-31 Doctoral Dissertation Minsoo Kim –
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BME 999-32 Doctoral Dissertation Maiken Nedergaard –
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BME 999-33 Doctoral Dissertation Eric Small –
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BME 999-34 Doctoral Dissertation Edward Freedman –
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BME 999-35 Doctoral Dissertation Benjamin Miller –
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BME 999-XX Doctoral Dissertation – –
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Number	Title	Instructor	Time
Monday
BME 431-1 FDA & Intellectual Property Joan Adamo
This interactive course will offer students exposure to intellectual property (IP), patenting processes and regulatory pathways for new medical innovations. Students will learn the terminology, processes and challenges involved in FDA regulations, and the protection and evaluation of intellectual property for medical innovations. Differences between Regulatory Affairs and Regulatory Science will be highlighted with opportunities to work on Regulatory Science in a project setting. An emphasis will be placed on ways that knowledge of prior art and regulatory barriers can optimize concept selection, and early phase project planning to best identify projects suitable for commercialization.
Monday and Wednesday
BME 486-1 Finite Elements Methods Hesamaldin Askari
This course provides a thorough grounding on the theory and application of linear finite element analysis in solid and structural mechanics and related disciplines. Topics: matrix structural analysis concepts and computational procedures, review of linear elasticity, variational methods and energy formulation, weighted residual methods and Galerkin techniques, shape functions based on assumed displacements, isoparametric formulation, FE solution of heat transfer problems, global analysis aspects, error estimation and convergence. MATLAB is used extensively througout the course
BME 492-1 Neuroenhancement&Rehab Eng Edmund Lalor
Introduction to topics and devices in the field of neuroengineering. The course will cover approaches to understanding, repairing, replacing, enhancing, and exploiting the properties of neural systems and will include a focus on scientific research directed at the interface between living neural systems and non-living components. Prerequisites: BME 210, BME 201P, BME 230, BME 218. Open to undergraduates with permission of instructor.
BME 455-1 Translational Biomedical Opt Regine Choe
This course provides considerations in designing optical instrument suitable for clinical translation, theory behind the light propagation in biological tissues, and data analysis and interpretation skills. In particular, fundamental theory behind the diffuse optical spectroscopy and tomography, diffuse correlation spectroscopy and photoacoustic tomography will be covered. Pre-requisites: BME221, BME270, OPT241, OPT261
BME 410-1 Introduction to Augmented and Virtual Reality Mujdat Cetin
This course provides a broad introduction to augmented and virtual reality (AR/VR) systems. The course involves lectures covering an overview of all aspects of the AR/VR domain, as well as individual work performed by each student aimed at providing more intensive training on various aspects of AR/VR. Topics covered in the lectures include history, conceptual origins, and design/evaluation principles of AR/VR technologies; overview of visual/auditory/haptic AR/VR interfaces and applications; visual perception; optics/platforms/sensors/displays; auditory perception and spatial audio; silicon hardware architecture and materials; graphics and computation; interfaces and user experience design; data processing and machine intelligence for AR/VR; introduction to AR/VR programming tools; societal implications and ethical aspects. At the end of the course, students will have gained familiarity with the techniques, languages, and cultures of fields integral to the convergent research theme of AR/VR. This course is co-instructed by Mujdat Cetin, Michele Rucci, Ross Maddox, Jannick Rolland, Yuhao Zhu, Andrew White, Chenliang Xu, and Zhen Bai.
BME 452-1 Med Imaging-Theory&Implemt Kevin Parker
Physics and implementation of X-ray, ultrasonic, and MR imaging systems. Special attention is given to the Fourier transform relations and reconstruction algorithms of X-ray and ultrasonic-computed tomography, and MRI. Prerequisite: ECE 242.
Monday, Wednesday, and Friday
BME 411-1 Cellular&Molecular Bio Found Ian Dickerson
Molecular biology, biochemistry, and genetics that are required to understand the biomedical and broader biological issues that affect our lives. Prerequisite: BIOL110.
Tuesday
Tuesday and Thursday
BME 496-1 Current Research Seminars Diane Dalecki
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BME 465-1 Introcell Mech & Mechbio Whasil Lee
This course will examine the mechanical properties of cells and the mechanotransduction processes of clinical and technological importance. Topics covered include the role of mechanotransducing biomolecules, models of cell mechanics, and the methods to measure mechanical properties of cells. This course will also introduce students to effects of internal / external mechanical stimuli on cellular processes which may lead to various human diseases. Students will learn basic terminology and concepts of mechanics at the molecular and cellular level with an emphasis on quantitative analysis, modeling, and applications to clinical medicine. Two additional laboratory modules will provide hands-on experience to measure cellular mechanical properties and mechanotransduction signaling using FRET-based force sensors and Calcium dye. Prerequisites/Corequisites: BME211 or 257 or 411, BME260, IND431 or Permission of Instructor. Limited to Juniors and Seniors ONLY.
BME 406-1 Sigs, Noise & Matrix Methods Stephen McAleavey
An overview of the theory and practice (with Matlab) of signal processing and analysis with applications to problems in biomedicine. Topics include continuous and discrete time linear systems, Fourier Series and Transforms (1D and 2D), spectral analysis, FIR and IIR digital filters, time-frequency analysis, principle components analysis, Bayes probability, random processes, optimal filters, and fundamentals of digital image processing. Examples drawn from medical applications.
BME 406-2 Technical Computing in BME Stephen McAleavey
Course Description: An introduction to the use of Matlab and associated tools for solving practical problems arising in biomedical engineering and related fields. Topics include: review of Matlab fundamentals; design and implementation of FIR and IIR digital filters; spectral and time-frequency analysis of signals; image processing and enhancement; statistical calculations; optimization and curve fitting; numerical solution of ordinary differential equations; symbolic math operations; applied linear algebra. Final Project. Prerequisite: enrolled as a graduate student
BME 483-1 Biosolid Mechanics Mark Buckley
In this course, we will survey the role of mechanics in cells, tissues, organs and organisms. A particular emphasis will be placed on the mechanics of the musculoskeletal system, the circulatory system and the eye. Engineering concepts will be used to understand how physical forces contribute to biological processes, especially disease and healing. Experimental and modeling techniques for characterizing the complex mechanical response of biosolids will be discussed in detail, and the continuum mechanics approach will highlighted.Prerequisites: ME226, BME 201, and 201P or ME 120.
BME 428-1 Physiological Control Systms Kevin Davis
This course introduces students to the theory and practice of control systems engineering. Topics include frequency domain modeling, time domain stability, transient and steady-state error analysis, root locus and frequency response techniques and feedback system design. Emphasis is placed on analyzing physiological control systems, but the concepts and design techniques are applicable and applied to a wide variety of other systems including mechanical and electrical systems. Prerequisites: juniors with MATH164, MATH 165 and BME 230 or ECE 241 (can be concurrent).
BME 453-1 Ultrasound Imaging Stephen McAleavey
This course investigates the imaging techniques applied in state-of-the-art ultrasound imaging and their theoretical bases. Topics include linear acoustic systems, spatial impulse responses, the k-space formulation, methods of acoustic field calculation, dynamic focusing and apodization, scattering, the statistics of acoustic speckle, speckle correlation, compounding techniques, phase aberration correction, velocity estimation, and flow imaging. A strong emphasis is placed on readings of original sources and student assignments and projects based on realistic acoustic simulations. Prerequisites: BME 230 or ECE 241.
BME 418-1 Intro to Neuroengineering Laurel Carney
Quantitative studies of neural responses at the cellular, circuit, and systems levels. Analytical and computational modeling of neurons and systems, including nonlinear behavior of neurons and neural circuits. Neural coding of information by single cells or neural populations. Introduction to neural networks. Techniques for recording neural activity.
BME 420-1 Biomedical Nanotech Kanika Vats
This course is designed to provide students with detailed knowledge of the principles of nanotechnology and their applications in the biomedical field. Topics of study will include synthesis & assembly of nanoscale structures, lithography, and nanobiomaterials. Students will focus on biomedically-relevant topics such as cancer treatment, bone disorder, diabetes; and learn how nanotechnology is helping diagnose, treat, and understand these medical disorders. Recent innovative research in the biomedical field will be highlighted during discussions of the latest journal articles. At the end of the course, students will have an appreciation of the enormous potential of biomedical nanotechnology, its current, and future applications
BME 420-2 Biomedical Nanotechnology Kanika Vats
This course is designed to provide students with detailed knowledge of principles and applications of nanotechnology in the biomedical field. Topics of study include synthesis & assembly of nanoscale structures, lithography, nanobiomaterials and nano-biomechanics along with the applications of nanotechnology in biomedical engineering. Recent innovative research in the field will be highlighted in lectures by discussing and critically analyzing recently published journal articles. Ultimately, students will have an appreciation of the enormous potential of biomedical nanotechnology, its current and potential applications. Prerequisites: MSC 202, CHEM 131,132, BME 245
BME 429-1 Applied Nanoscience and Nano-engineering Kanika Vats
Description This course will educate students how engineering at the nanoscale is different from macro-level, how/why it offers novel properties which can be harnessed and applied to multiple research fields. Course content will include topics such as, nanoparticles, nanotubes, nanowires- their synthesis, applications, and properties; nanofabrication: both top-down and bottom-up approaches, nano-electronics, nanophotonics, and nano-pumps. Additionally, the workings of many spectroscopic and microscopic techniques specifically developed to analyze and manipulate nanomaterials will be discussed in detail. Prerequisites: Chemistry-I (CHM 131), Chemistry-II (CHM132), Physics-I Mechanics (PHYS 121)Biology (BIO-110), Physics-II Electricity and Magnetism (PHYS 122) or permission of instructor Course dates: 8/26/2020-10/16/2020
BME 460-1 Quantitative Physiology Scott Seidman
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems. Prerequisite: ECE113 or BME210 or permission of instructor.
Wednesday
BME 460-4 Quantitative Physiology-Lab Scott Seidman
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems
BME 460-2 Quantitative Physiology-Lab Scott Seidman
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems
Wednesday and Friday
BME 466-1 Bioprocess Engineering Jason Condon
This course will explore the bioprocesses involved in producing a biopharmaceutical product (therapeutic proteins, cell therapy products, and vaccines). The course will take a stepwise journey through a typical production process from the perspective of a Bioprocess Engineer, starting with cell culture and moving downstream through purification and final fill. Engineering concepts involved in bioreactor design and control, cell removal/recovery operations, and protein purification will be examined. The course will also provide an introduction to the analytical methods used to test biopharmaceutical products for critical quality attributes The role of the regulatory agencies, like the US Food and Drug Administration, and the regulations that govern the industry will be introduced throughout the course in the context of the bioprocess to which they relate. Graduate students will need to complete a semester-end project in order to receive graduate credit for the course. Pre-requisites: BIO110, CHM132, CHE243 or ME225, CHE244 or Permission of Instructor
Thursday
Friday
BME 460-5 Quantitative Physiology-Lab Scott Seidman
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems
BME 411-2 Cellular&Molecular - Rec Ian Dickerson
Molecular biology, biochemistry, and genetics that are required to understand the biomedical and broader biological issues that affect our lives.
BME 535-1 Med Device Design Greg Gdowski
This course builds on clinical observations and guides the process of selection of an unmet clinical need for further design and development. Teams will refine observed needs, then use brainstorming and prototyping techniques to develop potential concepts. Six Sigma tools will be used to guide design decisions and clarify design requirements. Both oral and written communication skills will be developed.
BME 402-1 Research Methods Danielle Benoit
PreparesPh.D.studentstocarryoutindependentresearch.Researchtools,laboratoryskills,experimentalmethods,criticalthinking,presentations,andcareerplanningarediscussedasarefacilitiesandresourcesatUR/URMC.
BME 460-3 Quantitative Physiology-Lab Scott Seidman
A quantitative, model-oriented approach to physiological systems is presented. Topics include muscle and nerve tissue, the cardiovascular system, the respiratory system, the renal system, and a variety of neural systems
BME 418-2 Intro to Neuroengineer - Lab Laurel Carney
Quantitative studies of neural responses at the cellular, circuit, and systems levels. Analytical and computational modeling of neurons and systems, including nonlinear behavior of neurons and neural circuits. Neural coding of information by single cells or neural populations. Introduction to neural networks. Techniques for recording neural activity.