Graduate Programs

Term Schedule

Spring 2021

Number	Title	Instructor	Time
BME 404-1 Computational Methods Jong-Hoon Nam MW 4:50PM - 6:05PM
The course deals with computational methods to analytically intractable mathematical problems in biological research. For the first half of the course, general numerical analysis topics are reviewed such as linear algebra, ODE and PDE. Through homework assignments, students write their own computer code. Sufficient sample solutions are given to practice various numerical methods within limited time. The rest of the course is comprised of case studies and projects. Examples of computational analyses are drawn from life science problems such as biodynamics of human loco motion, ion channel kinetics, ionic diffusion, and finite element analysis of cells/tissues. For final project, students bring their own research problems, express them in mathematical equations, solve them using custom written computer programs and interpret the solutions. Prerequisites: Fundamental linear algebra, ordinary differential equations, some experience with MatLAB. Location Online Room 17 (ASE) (MW 4:50PM - 6:05PM)
BME 412-1 Visco in Bio Tissues Mark Buckley TR 9:40AM - 10:55AM
Viscoelastic materials have the capacity to both store and dissipate energy. As a result, properly describing their mechanical behavior lies outside the scope of both solid mechanics and fluid mechanics. This course will develop constitutive relations and strategies for solving boundary value problems in linear viscoelastic materials. In addition, the closely-related biphasic theory for fluid-filled porous solids will be introduced. An emphasis will be placed on applications to cartilage, tendon, ligament, muscle, blood vessels, and other biological tissues. Advanced topics including non-linear viscoelasticity, composite viscoelasticity and physical mechanisms of viscoelasticity will be surveyed. Preerequisites: ME225 or CHE243; ME226 or BME201 Location Hylan Building Room 101 (TR 9:40AM - 10:55AM)
BME 415-1 Neruosci of Neuroprosthetics Sarah McConnell MWF 2:00PM - 2:50PM
This class examines the structure, function, and vulnerability of the visual, auditory, vestibular, somatosensory, and motor systems, and explores how neuroprosthetics may ameliorate damage to these systems. Learning objectives will be addressed through lectures, journal article discussions, online discussions, case studies, and student presentations. Prior study in neuroscience is helpful but not required. Prerequisites: Any introductory Biology course. Undergraduate allowed with permission of instructor. Location Online Room 25 (ASE) (MWF 2:00PM - 2:50PM)
BME 432-1 FDA & IP Commercialization Joan Adamo M 3:25PM - 4:40PM
This interactive course focuses on Intellectual Property (IP) and FDA regulatory pathways for medical innovations. Emphasis will be placed on how knowledge of IP protection and evaluation, and regulatory barriers can optimize design, testing and commercialization strategies. Building on BME431 material, students will learn about the processes and barriers to bringing medical products through clinical trials. Instruction will include lectures, case studies, guest speakers and integrated assignments that will ask students to explore examples of IP and regulatory challenges, successes and failures. Lectures on regulatory and IP topics will alternate so students can appreciate the difficulty presented by balancing these two challenges in the innovation process. Some assignments may be tailored to individual student'sresearch, design or work concentration areas. A project conducted in partnership with the FDA will provide students an opportunity to submit a mock pre-Submission to the FDA for review and feedback. Location Helen Wood Hall Room 1W509 (M 3:25PM - 4:40PM)
BME 438-1 Intro to Quality Engineering Amy Lerner MW 11:50AM - 1:05PM
Concepts, tools and techniques for quality engineering in product design and statistical process control, including design of experiments, RCA, FMEA and measurement systems. Class meets January 15 - March 18, 2020. Offered alternate semesters. Location Dewey Room 2110E (MW 11:50AM - 1:05PM)
BME 438-2 Intro to Quality Engineering REC Amy Lerner R 3:25PM - 4:40PM
Concepts, tools and techniques for quality engineering in product design and statistical process control, including design of experiments, RCA, FMEA and measurement systems. Class meets January 15 - March 18, 2020. Offered alternate semesters. Location Harkness Room 114 (R 3:25PM - 4:40PM)
BME 442-1 Microbiomechanics James McGrath WF 9:00AM - 10:15AM
This course teaches the fundamental and applied science of biomedical microfluidic devices with an emphasis on applications important for cell culture, separations, and sensors. The first half focuses on the basic principles of diffusion and fluids while the second half teaches COMSOL modeling, animation of device operation, and microfabrication of devices. In the final two weeks of the course, each student builds a unique microfluidic system under the mentorship of faculty, staff or advanced graduate students. Enrollment is limited. Prerequisite: Permission of Instructor. Location Goergen Hall Room 110 (WF 9:00AM - 10:15AM)
BME 451-1 Biomedical Ultrasound Diane Dalecki MWF 8:00AM - 8:50AM
The physical basis for the use of high-frequency sound in medicine (diagnosis, therapy, and surgery) and biology. Topics include acoustic properties of tissues, sound propagation (both linear and nonlinear) in tissues, interactions of ultrasound with gas bodies (acoustic cavitation and contrast agents), thermal and non-thermal biological effects of ultrasound, ultrasonography, dosimetry, hyperthermia and lithotripsy. Graduate students will have extra assignments. Prerequisites: Math 164, Math 165, Physics 122 or Permission of instructor. Location Harkness Room 210 (MWF 8:00AM - 8:50AM)
BME 459-1 Applied Human Anatomy Martha Gdowski MW 2:00PM - 3:15PM
This course analyzes the structural composition of the human body from cellular to organ levels. The goal is to provide a foundation in human anatomy appropriate for students interested in the bioscience and health care professions (e.g. nursing, physical therapy, medicine, bioengineering). Learning objectives will be achieved through a combination of lecture and hands-on (laboratory) approaches, reinforced by clinical examples and analysis of how biomedical devices interface with anatomical structures. In addition, students will participate in small group discussions of clinical case studies, make group presentations of topic appropriate biomedical devices, and prepare a term paper on the subject of their choice selected from a list of topics generated by the instructor. Prerequisite: Any introductory biology course. Location (MW 2:00PM - 3:15PM)
BME 459-2 Applied Human Anatomy LAB Martha Gdowski R 4:50PM - 6:05PM
This course analyzes the structural composition of the human body from cellular to organ levels. The goal is to provide a foundation in human anatomy appropriate for students interested in the bioscience and health care professions (e.g. nursing, physical therapy, medicine, bioengineering). Learning objectives will be achieved through a combination of lecture and hands-on (laboratory) approaches, reinforced by clinical examples and analysis of how biomedical devices interface with anatomical structures. In addition, students will participate in small group discussions of clinical case studies, make group presentations of topic appropriate biomedical devices, and prepare a term paper on the subject of their choice selected from a list of topics generated by the instructor. Prerequisite: Any introductory biology course. Location (R 4:50PM - 6:05PM)
BME 459-3 Applied Human Anatomy REC Martha Gdowski T 12:30PM - 2:00PM
This course analyzes the structural composition of the human body from cellular to organ levels. The goal is to provide a foundation in human anatomy appropriate for students interested in the bioscience and health care professions (e.g. nursing, physical therapy, medicine, bioengineering). Learning objectives will be achieved through a combination of lecture and hands-on (laboratory) approaches, reinforced by clinical examples and analysis of how biomedical devices interface with anatomical structures. In addition, students will participate in small group discussions of clinical case studies, make group presentations of topic appropriate biomedical devices, and prepare a term paper on the subject of their choice selected from a list of topics generated by the instructor. Prerequisite: any introductory biology course. Location (T 12:30PM - 2:00PM)
BME 462-1 Cell & Tissue Engineering Hani Awad TR 11:05AM - 12:20PM
This course teaches the principles of modern cell and tissue engineering with a focus on understanding and manipulating the interactions between cells and their environment. After a brief overview of Cell and Tissue Engineering, the course covers 5 areas of the field. These are: 1) Physiology for Tissue Engineering; 2) Bioreactors and biomolecule production; 3) Materials for Tissue Engineering; 4) Cell Cultures and bioreactors and 5) Drug Delivery and Drug Discovery. Within each of these topics the emphasis is on analytical skills and instructors will assume knowledge of chemistry, mass transfer, fluid mechanics, thermodynamics and physiology consistent with the Cell and Tissue Engineering Track in BME. In a term project, graduate students must identify a technological need and present orally and in writing a proposal to meet the need. Must register for LAB and REC when registering for course. Prerequisites: BME 260, CHE225 (or ME123), CHE243 (or ME225), CHE244 and one of the following Cell Biology courses: BME211, BME411, BIO202 or BIO210; or permission of instructor. Location Dewey Room 2110D (TR 11:05AM - 12:20PM)
BME 462-2 Cell & Tissue Engineering LAB Hani Awad T 3:25PM - 6:05PM
This course teaches the principles of modern cell and tissue engineering with a focus on understanding and manipulating the interactions between cells and their environment. After a brief overview of Cell and Tissue Engineering, the course covers 5 areas of the field. These are: 1) Physiology for Tissue Engineering; 2) Bioreactors and biomolecule production; 3) Materials for Tissue Engineering; 4) Cell Cultures and bioreactors and 5) Drug Delivery and Drug Discovery. Within each of these topics the emphasis is on analytical skills and instructors will assume knowledge of chemistry, mass transfer, fluid mechanics, thermodynamics and physiology consistent with the Cell and Tissue Engineering Track in BME. In a term project, graduate students must identify a technological need and present orally and in writing a proposal to meet the need. Prerequisites: :BME 260, CHE225 (or ME123), CHE243 (or ME225), CHE244 and one of the following Cell Biology courses: BME211, BME411, BIO202 or BIO210; or permission of instructor. Location Goergen Hall Room 230 (T 3:25PM - 6:05PM)
BME 462-3 Cell & Tissue Engineering REC Hani Awad M 4:00PM - 6:00PM
This course teaches the principles of modern cell and tissue engineering with a focus on understanding and manipulating the interactions between cells and their environment. After a brief overview of Cell and Tissue Engineering, the course covers 5 areas of the field. These are: 1) Physiology for Tissue Engineering; 2) Bioreactors and biomolecule production; 3) Materials for Tissue Engineering; 4) Cell Cultures and bioreactors and 5) Drug Delivery and Drug Discovery. Within each of these topics the emphasis is on analytical skills and instructors will assume knowledge of chemistry, mass transfer, fluid mechanics, thermodynamics and physiology consistent with the Cell and Tissue Engineering Track in BME. In a term project, graduate students must identify a technological need and present orally and in writing a proposal to meet the need. Prerequisites: :BME 260, CHE225 (or ME123), CHE243 (or ME225), CHE244 and one of the following Cell Biology courses: BME211, BME411, BIO202 or BIO210; or permission of instructor. Location Goergen Hall Room 230 (M 4:00PM - 6:00PM)
BME 467-1 Models & Simulations of BME Systems Laurel Carney TR 2:00PM - 3:15PM
Introduction to analytical modeling and computational simulations of systems. Examples will include cardiovascular, respiratory, muscle, neural and population models. Analytical models for several physiological systems will be studied, and simulations will be written in Matlab. Prerequisites: BME221 and BME230 or permission of instructor. Location Hylan Building Room 101 (TR 2:00PM - 3:15PM)
BME 467-2 Models & Simulations of BME Systems - REC Laurel Carney F 3:25PM - 4:40PM
Introduction to analytical modeling and computational simulations of systems. Examples will include cardiovascular, respiratory, muscle, neural and population models. Analytical models for several physiological systems will be studied, and simulations will be written in Matlab. Prerequisites: BME221 and BME230 or permission of instructor. Location Online Room 3 (ASE) (F 3:25PM - 4:40PM)
BME 468-1 Struct&Anlysis of Biomolecl Whasil Lee TR 2:00PM - 3:15PM
This course will introduce student to the principles of protein & DNA structure and function; fundamental principles of protein folding domains, DNA structures, the spatial and conceptual relationships of biomolecules, role of amino acids mutation, the structure of biomolecules in relation to their functions, and mutation induced abnormal functions, which ay be linked directly to human diseases.The course will be taught using multiple instructional methods including lectures, labs using the open course program Visual Molecular Dynamics (VMD), and oral presentations with an associated critical discussion. Course materials will be posted on Blackboard. Seniors welcome. Prerequisites: BIO110 or introductory biology course. Location Goergen Hall Room 102 (TR 2:00PM - 3:15PM)
BME 472-1 Opt Microscopy in Bio&Med Michael Giacomelli TR 11:05AM - 12:20PM
This course will review the engineering of optical system for biomedical microscopy by exploring widely used biomedical imaging systems such as confocal microscopy, multiphoton microscopy and optical coherent tomography among others. These techniques will be introduced in the context of the imaging problems they solve with a goal of giving students a broad, undergraduate level understanding of the constraints and solutions to biomedical microscopy. The graduate version of this course will include additional assignments and be appropriate for graduate students starting out inbiomedical optics. Prerequisites: OPT261 and BME270. Location Online Room 29 (ASE) (TR 11:05AM - 12:20PM)
BME 474-1 Biomed Censors,Curcuits&Intr Scott Seidman –
Course will cover circuits and sensors used to measure physiological systems at an advanced level. Both signal conditioning and sensor characteristics will be addressed. Topics will include measurement of strain, pressure, flow, temperature, biopotentials, data acquisition, and electrical safety. The laboratory will focus on the practical implementation of electronic devices for biomedical measurements. Prerequisites: BME 210, ECE113 or equivalent, or permission of instructor.
BME 491-1 Master's Reading in BME – –
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BME 493-1 Master's Essay – –
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BME 495-01 Master's Research in BME Greg Gdowski –
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BME 495-02 Master's Research in BME Amy Lerner –
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BME 495-03 Master's Research in BME Hani Awad –
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BME 495-04 Master's Research in BME Scott Seidman –
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BME 495-05 Master's Research in BME Stephen McAleavey –
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BME 495-06 Master's Research in BME Lisa DeLouise –
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BME 495-07 Master's Research in BME James McGrath –
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BME 495-08 Master's Research in BME Mark Buckley –
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BME 495-09 Master's Research in BME Anne Luebke –
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BME 495-10 Master's Research in BME Geunyoung Yoon –
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BME 495-11 Master's Research in BME Benjamin Miller –
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BME 495-12 Master's Research in BME Ross Maddox –
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BME 495-13 Master's Research in BME Manuel Gomez-Ramirez –
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BME 495-14 Master's Research in BME Maiken Nedergaard –
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BME 495-15 Master's Research in BME Edmund Lalor –
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BME 496-1 Current Research Seminars Diane Dalecki TR 8:15AM - 9:30AM
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BME 589-1 Writing Proposals in BME Hani Awad T 4:30PM - 5:30PM
This course covers the essential aspects of organization and content for writing formal scientific proposals. Open to second-year Ph.D. candidates. Location Goergen Hall Room 239 (T 4:30PM - 5:30PM)
BME 591-1 PhD Readings in BME – –
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BME 593-1 Laboratory Rotations in BME Diane Dalecki –
Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
BME 593-2 Laboratory Rotations in BME Geunyoung Yoon –
Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
BME 593-3 Laboratory Rotations in BME Danielle Benoit –
Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
BME 593-4 Laboratory Rotations in BME Mark Buckley –
Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
BME 593-5 Laboratory Rotations in BME Alayna Loiselle –
Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
BME 593-6 Laboratory Rotations in BME Jianhui Zhong –
Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
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Attend seminars first half of the semester and then students rotate in at least 3 different labs during the first year of graduate study to learn of the diversity of research opportunities for Ph.D. research.
BME 595-01 PhD Research Hani Awad –
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BME 595-02 PhD Research Danielle Benoit –
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BME 595-03 PhD Research Andrew Berger –
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BME 595-04 PhD Research Edward Brown –
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BME 595-05 PhD Research Benjamin Miller –
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BME 595-06 PhD Research Mark Buckley –
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BME 595-07 PhD Research Laurel Carney –
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BME 595-08 PhD Research Regine Choe –
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BME 595-09 PhD Research Diane Dalecki –
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BME 595-10 PhD Research Michael Giacomelli –
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BME 595-11 PhD Research Catherine Kuo –
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BME 595-12 PhD Research Edmund Lalor –
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BME 595-13 PhD Research Whasil Lee –
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BME 595-14 PhD Research Anne Luebke –
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BME 595-15 PhD Research Ross Maddox –
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BME 595-16 PhD Research Stephen McAleavey –
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BME 595-17 PhD Research James McGrath –
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BME 595-18 PhD Research Jong-Hoon Nam –
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BME 595-19 PhD Research Richard Waugh –
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BME 595-20 PhD Research Benjamin Crane –
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BME 595-21 PhD Research Lisa DeLouise –
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BME 595-22 PhD Research Kenneth Henry –
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BME 595-23 PhD Research Denise Hocking –
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BME 595-24 PhD Research Jennifer Hunter –
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BME 595-25 PhD Research Alayna Loiselle –
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BME 595-26 PhD Research Marc Schieber –
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BME 595-27 PhD Research Edward Schwarz –
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BME 595-28 PhD Research David Williams –
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BME 595-29 PhD Research Jesse Schallek –
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BME 595-30 PhD Research Geunyoung Yoon –
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BME 595-31 PhD Research Joe Chakkalakal –
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BME 595-32 PhD Research Minsoo Kim –
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BME 595-33 PhD Research Maiken Nedergaard –
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BME 595-34 PhD Research Eric Small –
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BME 595-35 PhD Research Edward Freedman –
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BME 595-36 PhD Research Jianhui Zhong –
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BME 595-37 PhD Research Angela Glading –
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BME 595-38 PhD Research Giovanni Schifitto –
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BME 895-1 Cont of Master's Enrollment – –
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BME 897-01 Master's Dissertation Greg Gdowski –
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BME 897-02 Master's Dissertation Amy Lerner –
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BME 897-03 Master's Dissertation Ross Maddox –
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BME 897-04 Master's Dissertation Ross Maddox –
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BME 897-05 Master's Dissertation Hani Awad –
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BME 897-06 Master's Dissertation Scott Seidman –
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BME 897-07 Master's Dissertation Lisa DeLouise –
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BME 897-08 Master's Dissertation Mark Buckley –
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BME 897-09 Master's Dissertation Benjamin Miller –
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BME 897A-XX Masters In-Absentia – –
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BME 899-01 Master's Dissertation Hani Awad –
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BME 899-02 Master's Dissertation Greg Gdowski –
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BME 899-03 Master's Dissertation Amy Lerner –
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BME 899-04 Master's Dissertation Scott Seidman –
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BME 899-05 Master's Dissertation Ross Maddox –
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BME 899-06 Master's Dissertation James McGrath –
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BME 899-07 Master's Dissertation Lisa DeLouise –
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BME 899-08 Master's Dissertation Stephen McAleavey –
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BME 899-09 Master's Dissertation Mark Buckley –
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BME 899-10 Master's Dissertation Benjamin Miller –
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BME 899-11 Master's Dissertation Maiken Nedergaard –
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BME 995-1 Cont of Doctoral Enrollment – –
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BME 997-01 Doctoral Dissertation Hani Awad –
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BME 997-02 Doctoral Dissertation Danielle Benoit –
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BME 997-03 Doctoral Dissertation Andrew Berger –
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BME 997-04 Doctoral Dissertation Edward Brown –
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BME 997-05 Doctoral Dissertation Mark Buckley –
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BME 997-06 Doctoral Dissertation Laurel Carney –
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BME 997-07 Doctoral Dissertation Regine Choe –
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BME 997-08 Doctoral Dissertation Diane Dalecki –
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BME 997-09 Doctoral Dissertation Michael Giacomelli –
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BME 997-10 Doctoral Dissertation Anne Luebke –
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BME 997-11 Doctoral Dissertation Edmund Lalor –
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BME 997-12 Doctoral Dissertation Catherine Kuo –
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BME 997-13 Doctoral Dissertation Whasil Lee –
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BME 997-14 Doctoral Dissertation Ross Maddox –
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BME 997-15 Doctoral Dissertation Stephen McAleavey –
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BME 997-16 Doctoral Dissertation James McGrath –
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BME 997-17 Doctoral Dissertation Jong-Hoon Nam –
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BME 997-18 Doctoral Dissertation Lisa DeLouise –
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BME 997-19 Doctoral Dissertation Kenneth Henry –
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BME 997-20 Doctoral Dissertation Denise Hocking –
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BME 997-21 Doctoral Dissertation Edward Schwarz –
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BME 997-22 Doctoral Dissertation Jesse Schallek –
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BME 997-23 Doctoral Dissertation Geunyoung Yoon –
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BME 997-24 Doctoral Dissertation Minsoo Kim –
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BME 997-25 Doctoral Dissertation Benjamin Miller –
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BME 997-26 Doctoral Dissertation Eric Small –
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BME 997-27 Doctoral Dissertation Alayna Loiselle –
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BME 999-01 Doctoral Dissertation Hani Awad –
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BME 999-02 Doctoral Dissertation Danielle Benoit –
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BME 999-03 Doctoral Dissertation Andrew Berger –
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BME 999-04 Doctoral Dissertation Edward Brown –
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BME 999-05 Doctoral Dissertation Mark Buckley –
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BME 999-06 Doctoral Dissertation Laurel Carney –
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BME 999-07 Doctoral Dissertation Regine Choe –
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BME 999-08 Doctoral Dissertation Diane Dalecki –
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BME 999-09 Doctoral Dissertation Michael Giacomelli –
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BME 999-10 Doctoral Dissertation Anne Luebke –
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BME 999-11 Doctoral Dissertation Edmund Lalor –
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BME 999-12 Doctoral Dissertation Catherine Kuo –
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BME 999-13 Doctoral Dissertation Whasil Lee –
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BME 999-14 Doctoral Dissertation Ross Maddox –
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BME 999-15 Doctoral Dissertation Stephen McAleavey –
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BME 999-16 Doctoral Dissertation James McGrath –
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BME 999-17 Doctoral Dissertation Jong-Hoon Nam –
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BME 999-18 Doctoral Dissertation Richard Waugh –
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BME 999-19 Doctoral Dissertation Benjamin Crane –
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BME 999-20 Doctoral Dissertation Lisa DeLouise –
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BME 999-21 Doctoral Dissertation Kenneth Henry –
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BME 999-22 Doctoral Dissertation Denise Hocking –
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BME 999-23 Doctoral Dissertation Jennifer Hunter –
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BME 999-24 Doctoral Dissertation Alayna Loiselle –
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BME 999-25 Doctoral Dissertation Marc Schieber –
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BME 999-26 Doctoral Dissertation Edward Schwarz –
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BME 999-27 Doctoral Dissertation David Williams –
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BME 999-28 Doctoral Dissertation Jesse Schallek –
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BME 999-29 Doctoral Dissertation Geunyoung Yoon –
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BME 999-30 Doctoral Dissertation Joe Chakkalakal –
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BME 999-31 Doctoral Dissertation Minsoo Kim –
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BME 999-32 Doctoral Dissertation Maiken Nedergaard –
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BME 999-33 Doctoral Dissertation Eric Small –
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BME 999-34 Doctoral Dissertation Edward Freedman –
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BME 999-35 Doctoral Dissertation Benjamin Miller –
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Number	Title	Instructor	Time
Monday
BME 432-1 FDA & IP Commercialization Joan Adamo
This interactive course focuses on Intellectual Property (IP) and FDA regulatory pathways for medical innovations. Emphasis will be placed on how knowledge of IP protection and evaluation, and regulatory barriers can optimize design, testing and commercialization strategies. Building on BME431 material, students will learn about the processes and barriers to bringing medical products through clinical trials. Instruction will include lectures, case studies, guest speakers and integrated assignments that will ask students to explore examples of IP and regulatory challenges, successes and failures. Lectures on regulatory and IP topics will alternate so students can appreciate the difficulty presented by balancing these two challenges in the innovation process. Some assignments may be tailored to individual student'sresearch, design or work concentration areas. A project conducted in partnership with the FDA will provide students an opportunity to submit a mock pre-Submission to the FDA for review and feedback.
BME 462-3 Cell & Tissue Engineering REC Hani Awad
This course teaches the principles of modern cell and tissue engineering with a focus on understanding and manipulating the interactions between cells and their environment. After a brief overview of Cell and Tissue Engineering, the course covers 5 areas of the field. These are: 1) Physiology for Tissue Engineering; 2) Bioreactors and biomolecule production; 3) Materials for Tissue Engineering; 4) Cell Cultures and bioreactors and 5) Drug Delivery and Drug Discovery. Within each of these topics the emphasis is on analytical skills and instructors will assume knowledge of chemistry, mass transfer, fluid mechanics, thermodynamics and physiology consistent with the Cell and Tissue Engineering Track in BME. In a term project, graduate students must identify a technological need and present orally and in writing a proposal to meet the need. Prerequisites: :BME 260, CHE225 (or ME123), CHE243 (or ME225), CHE244 and one of the following Cell Biology courses: BME211, BME411, BIO202 or BIO210; or permission of instructor.
Monday, Tuesday, Wednesday, Thursday, and Friday
Monday and Wednesday
BME 438-1 Intro to Quality Engineering Amy Lerner
Concepts, tools and techniques for quality engineering in product design and statistical process control, including design of experiments, RCA, FMEA and measurement systems. Class meets January 15 - March 18, 2020. Offered alternate semesters.
BME 459-1 Applied Human Anatomy Martha Gdowski
This course analyzes the structural composition of the human body from cellular to organ levels. The goal is to provide a foundation in human anatomy appropriate for students interested in the bioscience and health care professions (e.g. nursing, physical therapy, medicine, bioengineering). Learning objectives will be achieved through a combination of lecture and hands-on (laboratory) approaches, reinforced by clinical examples and analysis of how biomedical devices interface with anatomical structures. In addition, students will participate in small group discussions of clinical case studies, make group presentations of topic appropriate biomedical devices, and prepare a term paper on the subject of their choice selected from a list of topics generated by the instructor. Prerequisite: Any introductory biology course.
BME 404-1 Computational Methods Jong-Hoon Nam
The course deals with computational methods to analytically intractable mathematical problems in biological research. For the first half of the course, general numerical analysis topics are reviewed such as linear algebra, ODE and PDE. Through homework assignments, students write their own computer code. Sufficient sample solutions are given to practice various numerical methods within limited time. The rest of the course is comprised of case studies and projects. Examples of computational analyses are drawn from life science problems such as biodynamics of human loco motion, ion channel kinetics, ionic diffusion, and finite element analysis of cells/tissues. For final project, students bring their own research problems, express them in mathematical equations, solve them using custom written computer programs and interpret the solutions. Prerequisites: Fundamental linear algebra, ordinary differential equations, some experience with MatLAB.
Monday, Wednesday, and Friday
BME 451-1 Biomedical Ultrasound Diane Dalecki
The physical basis for the use of high-frequency sound in medicine (diagnosis, therapy, and surgery) and biology. Topics include acoustic properties of tissues, sound propagation (both linear and nonlinear) in tissues, interactions of ultrasound with gas bodies (acoustic cavitation and contrast agents), thermal and non-thermal biological effects of ultrasound, ultrasonography, dosimetry, hyperthermia and lithotripsy. Graduate students will have extra assignments. Prerequisites: Math 164, Math 165, Physics 122 or Permission of instructor.
BME 415-1 Neruosci of Neuroprosthetics Sarah McConnell
This class examines the structure, function, and vulnerability of the visual, auditory, vestibular, somatosensory, and motor systems, and explores how neuroprosthetics may ameliorate damage to these systems. Learning objectives will be addressed through lectures, journal article discussions, online discussions, case studies, and student presentations. Prior study in neuroscience is helpful but not required. Prerequisites: Any introductory Biology course. Undergraduate allowed with permission of instructor.
Tuesday
BME 459-3 Applied Human Anatomy REC Martha Gdowski
This course analyzes the structural composition of the human body from cellular to organ levels. The goal is to provide a foundation in human anatomy appropriate for students interested in the bioscience and health care professions (e.g. nursing, physical therapy, medicine, bioengineering). Learning objectives will be achieved through a combination of lecture and hands-on (laboratory) approaches, reinforced by clinical examples and analysis of how biomedical devices interface with anatomical structures. In addition, students will participate in small group discussions of clinical case studies, make group presentations of topic appropriate biomedical devices, and prepare a term paper on the subject of their choice selected from a list of topics generated by the instructor. Prerequisite: any introductory biology course.
BME 462-2 Cell & Tissue Engineering LAB Hani Awad
This course teaches the principles of modern cell and tissue engineering with a focus on understanding and manipulating the interactions between cells and their environment. After a brief overview of Cell and Tissue Engineering, the course covers 5 areas of the field. These are: 1) Physiology for Tissue Engineering; 2) Bioreactors and biomolecule production; 3) Materials for Tissue Engineering; 4) Cell Cultures and bioreactors and 5) Drug Delivery and Drug Discovery. Within each of these topics the emphasis is on analytical skills and instructors will assume knowledge of chemistry, mass transfer, fluid mechanics, thermodynamics and physiology consistent with the Cell and Tissue Engineering Track in BME. In a term project, graduate students must identify a technological need and present orally and in writing a proposal to meet the need. Prerequisites: :BME 260, CHE225 (or ME123), CHE243 (or ME225), CHE244 and one of the following Cell Biology courses: BME211, BME411, BIO202 or BIO210; or permission of instructor.
BME 589-1 Writing Proposals in BME Hani Awad
This course covers the essential aspects of organization and content for writing formal scientific proposals. Open to second-year Ph.D. candidates.
Tuesday and Thursday
BME 496-1 Current Research Seminars Diane Dalecki
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BME 412-1 Visco in Bio Tissues Mark Buckley
Viscoelastic materials have the capacity to both store and dissipate energy. As a result, properly describing their mechanical behavior lies outside the scope of both solid mechanics and fluid mechanics. This course will develop constitutive relations and strategies for solving boundary value problems in linear viscoelastic materials. In addition, the closely-related biphasic theory for fluid-filled porous solids will be introduced. An emphasis will be placed on applications to cartilage, tendon, ligament, muscle, blood vessels, and other biological tissues. Advanced topics including non-linear viscoelasticity, composite viscoelasticity and physical mechanisms of viscoelasticity will be surveyed. Preerequisites: ME225 or CHE243; ME226 or BME201
BME 462-1 Cell & Tissue Engineering Hani Awad
This course teaches the principles of modern cell and tissue engineering with a focus on understanding and manipulating the interactions between cells and their environment. After a brief overview of Cell and Tissue Engineering, the course covers 5 areas of the field. These are: 1) Physiology for Tissue Engineering; 2) Bioreactors and biomolecule production; 3) Materials for Tissue Engineering; 4) Cell Cultures and bioreactors and 5) Drug Delivery and Drug Discovery. Within each of these topics the emphasis is on analytical skills and instructors will assume knowledge of chemistry, mass transfer, fluid mechanics, thermodynamics and physiology consistent with the Cell and Tissue Engineering Track in BME. In a term project, graduate students must identify a technological need and present orally and in writing a proposal to meet the need. Must register for LAB and REC when registering for course. Prerequisites: BME 260, CHE225 (or ME123), CHE243 (or ME225), CHE244 and one of the following Cell Biology courses: BME211, BME411, BIO202 or BIO210; or permission of instructor.
BME 472-1 Opt Microscopy in Bio&Med Michael Giacomelli
This course will review the engineering of optical system for biomedical microscopy by exploring widely used biomedical imaging systems such as confocal microscopy, multiphoton microscopy and optical coherent tomography among others. These techniques will be introduced in the context of the imaging problems they solve with a goal of giving students a broad, undergraduate level understanding of the constraints and solutions to biomedical microscopy. The graduate version of this course will include additional assignments and be appropriate for graduate students starting out inbiomedical optics. Prerequisites: OPT261 and BME270.
BME 467-1 Models & Simulations of BME Systems Laurel Carney
Introduction to analytical modeling and computational simulations of systems. Examples will include cardiovascular, respiratory, muscle, neural and population models. Analytical models for several physiological systems will be studied, and simulations will be written in Matlab. Prerequisites: BME221 and BME230 or permission of instructor.
BME 468-1 Struct&Anlysis of Biomolecl Whasil Lee
This course will introduce student to the principles of protein & DNA structure and function; fundamental principles of protein folding domains, DNA structures, the spatial and conceptual relationships of biomolecules, role of amino acids mutation, the structure of biomolecules in relation to their functions, and mutation induced abnormal functions, which ay be linked directly to human diseases.The course will be taught using multiple instructional methods including lectures, labs using the open course program Visual Molecular Dynamics (VMD), and oral presentations with an associated critical discussion. Course materials will be posted on Blackboard. Seniors welcome. Prerequisites: BIO110 or introductory biology course.
Wednesday
Wednesday and Friday
BME 442-1 Microbiomechanics James McGrath
This course teaches the fundamental and applied science of biomedical microfluidic devices with an emphasis on applications important for cell culture, separations, and sensors. The first half focuses on the basic principles of diffusion and fluids while the second half teaches COMSOL modeling, animation of device operation, and microfabrication of devices. In the final two weeks of the course, each student builds a unique microfluidic system under the mentorship of faculty, staff or advanced graduate students. Enrollment is limited. Prerequisite: Permission of Instructor.
Thursday
BME 438-2 Intro to Quality Engineering REC Amy Lerner
Concepts, tools and techniques for quality engineering in product design and statistical process control, including design of experiments, RCA, FMEA and measurement systems. Class meets January 15 - March 18, 2020. Offered alternate semesters.
BME 459-2 Applied Human Anatomy LAB Martha Gdowski
This course analyzes the structural composition of the human body from cellular to organ levels. The goal is to provide a foundation in human anatomy appropriate for students interested in the bioscience and health care professions (e.g. nursing, physical therapy, medicine, bioengineering). Learning objectives will be achieved through a combination of lecture and hands-on (laboratory) approaches, reinforced by clinical examples and analysis of how biomedical devices interface with anatomical structures. In addition, students will participate in small group discussions of clinical case studies, make group presentations of topic appropriate biomedical devices, and prepare a term paper on the subject of their choice selected from a list of topics generated by the instructor. Prerequisite: Any introductory biology course.
Friday
BME 467-2 Models & Simulations of BME Systems - REC Laurel Carney
Introduction to analytical modeling and computational simulations of systems. Examples will include cardiovascular, respiratory, muscle, neural and population models. Analytical models for several physiological systems will be studied, and simulations will be written in Matlab. Prerequisites: BME221 and BME230 or permission of instructor.